Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.050 Biomarker disease BEFREE F-FDG PET/CT, endoscopy, and tissue biopsy diagnosed the nodule as a metastasis of esophageal adenocarcinoma. 31833929 2020
Entrez Id: 864
Gene Symbol: RUNX3
RUNX3
0.020 AlteredExpression disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 931
Gene Symbol: MS4A1
MS4A1
0.010 AlteredExpression disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 54474
Gene Symbol: KRT20
KRT20
0.010 AlteredExpression disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 3146
Gene Symbol: HMGB1
HMGB1
0.010 Biomarker disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 50943
Gene Symbol: FOXP3
FOXP3
0.010 Biomarker disease BEFREE Subcellular epithelial protein (HMGB1, p53, RUNX3) expression, alongside expression of CD20, CD4, CD8 and Foxp3 to characterise stromal B lymphocyte, and helper, cytotoxic and regulatory T-lymphocyte cell infiltrate, respectively, was assessed by immunohistochemistry in 218 human tissue samples including normal oesophageal/gastric biopsies (n = 39), BO (non-dysplasia, dysplasia, non-dysplastic background from progressors to dysplasia or cancer, n = 121) and oesophageal adenocarcinoma (n = 58). 31831860 2020
Entrez Id: 23583
Gene Symbol: SMUG1
SMUG1
0.050 Biomarker disease BEFREE Patients who received baseline <sup>18</sup>F-FDG PET/CT imaging during workup for newly diagnosed esophageal adenocarcinoma (EAC) were included. 31823231 2020
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 Biomarker disease BEFREE Phase II Feasibility and Biomarker Study of Neoadjuvant Trastuzumab and Pertuzumab With Chemoradiotherapy for Resectable Human Epidermal Growth Factor Receptor 2-Positive Esophageal Adenocarcinoma: TRAP Study. 31809243 2020
Entrez Id: 100187907
Gene Symbol: TRAP
TRAP
0.010 Biomarker disease BEFREE Phase II Feasibility and Biomarker Study of Neoadjuvant Trastuzumab and Pertuzumab With Chemoradiotherapy for Resectable Human Epidermal Growth Factor Receptor 2-Positive Esophageal Adenocarcinoma: TRAP Study. 31809243 2020
Entrez Id: 81631
Gene Symbol: MAP1LC3B
MAP1LC3B
0.010 Biomarker disease BEFREE Correction to: LC3B globular structures correlate with survival in esophageal adenocarcinoma. 31795977 2019
Entrez Id: 4233
Gene Symbol: MET
MET
0.100 AlteredExpression disease BEFREE Combination effect of lapatinib with foretinib in HER2 and MET co-activated experimental esophageal adenocarcinoma. 31772236 2019
Entrez Id: 2064
Gene Symbol: ERBB2
ERBB2
0.100 AlteredExpression disease BEFREE Recent studies have demonstrated that HER2 and MET receptor tyrosine kinases are co-overexpressed in a subset esophageal adenocarcinoma (EAC). 31772236 2019
Entrez Id: 7157
Gene Symbol: TP53
TP53
0.400 GeneticVariation disease BEFREE Barrett's esophagus (BE) can progress to dysplasia and esophageal adenocarcinoma (EAC), accompanied by mutations in TP53 that increase the stability of its product, p53. 31715145 2020
Entrez Id: 4512
Gene Symbol: COX1
COX1
0.050 Biomarker disease BEFREE Targeting the COX1/2-Driven thromboxane A2 pathway suppresses Barrett's esophagus and esophageal adenocarcinoma development. 31707149 2019
Entrez Id: 545
Gene Symbol: ATR
ATR
0.010 Biomarker disease BEFREE Our aim was to develop an accurate and inexpensive method using biofluids (plasma, serum, saliva or urine) for detecting oesophageal stages through to OAC (squamous; inflammatory; Barrett's; low-grade dysplasia; high-grade dysplasia; OAC) using attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy. 31696873 2019
Entrez Id: 8289
Gene Symbol: ARID1A
ARID1A
0.320 Biomarker disease BEFREE We hypothesized that ARID1A loss is associated with prognosis and DNA MMR protein deficiency in esophageal adenocarcinoma. 31655170 2019
Entrez Id: 5820
Gene Symbol: PVT1
PVT1
0.010 AlteredExpression disease BEFREE LncRNA PVT1 up-regulation is a poor prognosticator and serves as a therapeutic target in esophageal adenocarcinoma. 31601234 2019
Entrez Id: 338
Gene Symbol: APOB
APOB
0.100 GeneticVariation disease GWASCAT Gastroesophageal reflux GWAS identifies risk loci that also associate with subsequent severe esophageal diseases. 31527586 2019
Entrez Id: 1991
Gene Symbol: ELANE
ELANE
0.010 Biomarker disease BEFREE Differential Expression Profiles of Oxidative Stress Levels, 8-oxo-dG and 4-HNE, in Barrett's Esophagus Compared to Esophageal Adenocarcinoma. 31509954 2019
Entrez Id: 4586
Gene Symbol: MUC5AC
MUC5AC
0.020 Biomarker disease BEFREE AGR2 preferentially engages with MUC-5 as a primary client and is coexpressed with the acidic mucin in Barrett's esophagus and esophageal adenocarcinoma tissue. 31436131 2019
Entrez Id: 727897
Gene Symbol: MUC5B
MUC5B
0.010 Biomarker disease BEFREE AGR2 preferentially engages with MUC-5 as a primary client and is coexpressed with the acidic mucin in Barrett's esophagus and esophageal adenocarcinoma tissue. 31436131 2019
Entrez Id: 10551
Gene Symbol: AGR2
AGR2
0.010 Biomarker disease BEFREE AGR2 preferentially engages with MUC-5 as a primary client and is coexpressed with the acidic mucin in Barrett's esophagus and esophageal adenocarcinoma tissue. 31436131 2019
Entrez Id: 2018
Gene Symbol: EMX2
EMX2
0.010 Biomarker disease BEFREE EMX2 is epigenetically silenced and suppresses epithelial‑mesenchymal transition in human esophageal adenocarcinoma. 31432154 2019
Entrez Id: 407975
Gene Symbol: MIR17HG
MIR17HG
0.020 AlteredExpression disease BEFREE Upregulation of miR-17-92 cluster is associated with progression and lymph node metastasis in oesophageal adenocarcinoma. 31431687 2019
Entrez Id: 406899
Gene Symbol: MIR106A
MIR106A
0.010 Biomarker disease BEFREE This comprehensive data demonstrated the importance of miR-17-92 cluster and miR-106a for progression as well as LNM in OAC indicating that those might be feasible prognostic biomarkers. 31431687 2019